PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027158-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 469aa    MW: 51634.4 Da    PI: 6.7795
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027158-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08339386448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WT+ E  +lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
  WALNUT_00027158-RA 339 WTPSEVIKLVDGISEYGVGRWTDIKRLLFstsAYRTPIDLRDKWRNLL 386
                         ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-11330389IPR009057Homeodomain-like
PROSITE profilePS5129413.323331390IPR017930Myb domain
SuperFamilySSF466891.64E-15333388IPR009057Homeodomain-like
SMARTSM007177.5E-9335388IPR001005SANT/Myb domain
CDDcd116606.69E-17337387No hitNo description
PfamPF002491.4E-6339386IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAVKEDELSV STLEDETIEV EHLFAEPKTE HVSVDGVLSF GDVSLGKCLH IEDFSCGFEY  60
GLTNNGGLDS NTTQEGEDLQ LDVLDGLLDE IDEVDDLDAT NGLSNACECE DFLLDIEFAE  120
NATKLDLGRS KESCLGNSSS ESQSPGLSGS SNGAVGISES SSVTILESEC KNDALNKTAT  180
CKLHGILVSK CGCRPPDEDS IHATSLELTK LDDLNSDKNL LACGISSAGG EKRLRKPTRR  240
YIEEFSDKKL EYMKRGEKYS AGMRRRALTV IPEEKSLGGI SVPAVSQFRA RLGRPKKQKQ  300
VPILEIESDK ELVSSESEDD GVTKKISKKH DRRKHQRMWT PSEVIKLVDG ISEYGVGRWT  360
DIKRLLFSTS AYRTPIDLRD KWRNLLRASG AQKPTKKGVE QKQKHSLRPL PSSLLRRVLE  420
LAKIHPYPRV RISKNLCVGQ VTPAMVPSAS KGTPPSSLGG RAVKRKKYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869952.11e-160PREDICTED: uncharacterized protein LOC107407213
TrEMBLA0A061ET861e-143A0A061ET86_THECC; TRF-like 8, putative isoform 1
STRINGVIT_08s0040g01640.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-23TRF-like 6